Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs11364692 chr9:138779668 CA/C 0.000178 485 31.33 31.27 17.15 KM Plot
PRAD rs11374166 chr15:68078177 C/CT 0.000167 490 33.37 28.05 26.02 KM Plot
PRAD rs113749311 chr4:187811563 T/G 2.05E-6 483 31.23 28.3 26.8 KM Plot
PRAD rs113816941 chr2:178801661 AT/A 4.13E-5 494 30.77 31.93 20.48 KM Plot
PRAD rs113826521 chr7:135167999 T/C 1.88E-9 492 30.53 32.63 3.03 KM Plot
PRAD rs113836270 chr6:168106966 G/A 3.54E-8 491 31.87 25.65 21.97 KM Plot
PRAD rs113857308 chr6:8520906 G/T 1.11E-7 491 30.73 35.93 20.93 KM Plot
PRAD rs113921485 chr3:112503023 G/A 2.15E-7 494 30.78 33.72 17.77 KM Plot
PRAD rs113962908 chr3:184190483 G/A 0.000172 475 32.27 28.23 30.02 KM Plot
PRAD rs113972811 chr4:5720407 G/A 0.000163 489 30.8 29.17 38.33 KM Plot
PRAD rs113990079 chr6:43389045 G/A 5.23E-12 482 31.25 29.97 44.3 KM Plot
PRAD rs113995269 chr4:187812723 C/T 2.06E-6 482 31.13 28.75 26.8 KM Plot
PRAD rs114037201 chr2:107439448 G/A 0.000115 492 30.87 30.7 32.63 KM Plot
PRAD rs11418668 chr8:143449824 T/TG 0.000115 487 30.63 31.02 31.87 KM Plot
PRAD rs114356654 chr4:187811298 C/T 2.06E-6 483 31.13 28.57 26.8 KM Plot